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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.366600.1 | ||||||||
Common Name | Csa_2G287110, LOC101212977 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TALE | ||||||||
Protein Properties | Length: 558aa MW: 61616.2 Da PI: 6.5096 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29 | 1.8e-09 | 357 | 394 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Cucsa.366600.1 357 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 394 664559******************************88 PP | |||||||
2 | BELL | 121.1 | 4.9e-39 | 214 | 285 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF++v+g +a pYt+lA+ka+SrhFrcLkdai++q+ Cucsa.366600.1 214 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDEVMGFRAAVPYTALAQKAMSRHFRCLKDAISSQL 285 589******************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.4E-76 | 140 | 283 | IPR006563 | POX domain |
Pfam | PF07526 | 3.6E-53 | 146 | 282 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 335 | 398 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.76E-12 | 338 | 399 | No hit | No description |
SMART | SM00389 | 1.2E-9 | 338 | 402 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-17 | 339 | 405 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-29 | 341 | 404 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-18 | 355 | 394 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MFNFPPPPPP PPPQTDWYSN RQTINAADSA VAMQLFLMNP NPRSPSPPPP PPPSSTLHML 60 LPNPSSGGSY GQFTWGVVPQ QETNNDHSSS NPNEGRLSLS LSSSLEAAKA EELRMGDSNN 120 GLLYHHHHHP HVGIGSSNPL GVVNLLRNSK YIKAAQELLE EFCSVGRGQF KKNNHNNKSN 180 LPSNSNSHGG GGGDGAGVSS SSTKDHQPSL SATDRIEHQR RKVKLLSMLD EVDRRYNHYC 240 EQMQMVVNSF DEVMGFRAAV PYTALAQKAM SRHFRCLKDA ISSQLKHSCE MLGEKDGGVT 300 GRASGITKGE TPRLKLLEQS LRQQRAFHQM GIMEQEAWRP QRGLPERSVN ILRAWLFEHF 360 LHPYPSDADK HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQEAKD DDDDDHNNNN 420 NNSNNNNNNS DDEEEEEDTQ TNNNHQQIMN PLSQTPTLTP QPQALPPSSS AVAQTFPANN 480 YETELQDTCR RVSVLAAPDL QFGTTNAAAT SDIEGPTTLI RFGTTAGDVS LTLGLRHAGN 540 IPDQTSPFAL RSEFGGC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 344 | 402 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 344 | 402 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 2e-16 | 344 | 402 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-16 | 344 | 402 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681913 | 0.0 | LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011649358.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 2 | ||||
Refseq | XP_011649357.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 2 | ||||
Swissprot | Q94KL5 | 1e-147 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A0A0LM01 | 0.0 | A0A0A0LM01_CUCSA; Uncharacterized protein | ||||
STRING | GLYMA02G06730.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3524 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-135 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.366600.1 |
Entrez Gene | 101212977 |
Publications ? help Back to Top | |||
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